Publications
A Super-resolution spatial atlas of SARS-CoV-2 infection in human cells
Andronov, L.#, Han, M.#, Balaji, A., Zhu, Y., Qi, L. S., Moerner, W. E. (#co-first author)
BioRxiv, 2025
CRISPR-TO: a versatile tool for programmable control of the spatial transcriptome
Han, M.*
Nat. Rev. Neurosci., 2025
**Before joining IU Biology**
Programmable control of spatial transcriptome in live cells and neurons
Han, M., Fu, M. L., Zhu, Y., Choi, A. A., Li, E., Bezney, J., Cai, S., Miles, L., Ma, Y., Qi, L. S.
Nature, 2025
Nanoscale cellular organization of viral RNA and proteins in SARS-CoV-2 replication organelles
Andronov, L.#, Han, M.#, Zhu, Y., Roy, A. R., Barentine, A. E. S., Garhyan, J., Qi, L. S., Moerner, W. E. (#co-first author)
Nat. Commun., 2025
High-resolution dynamic imaging of chromatin DNA communication using Oligo-LiveFISH
Zhu, Y., Balaji, A., Han, M., Andronov, L., Roy, A. R., Wei, Z., Chen, C., Miles, L., Cai, S., Gu, Z., Tse, A., Yu, B. C., Uenaka, T., Lin, X., Spakowitz, A. J., Moerner, W. E., Qi, L. S.
Cell, 2025
Broad-spectrum CRISPR-mediated inhibition of SARS-CoV-2 variants and endemic coronaviruses in vitro
Zeng, L., Liu, Y., Nguyenla, X. H., Abbott, T. R., Han, M., Zhu, Y., Chemparathy, A., Lin, X., Chen, X., Wang, H., Rane, D. A., Spatz, J. M., Jain, S., Rustagi, A., Pinsky, B., Zepeda, A. E., Kadina, A. P., Walker, J. A., 3rd, Holden, K., Temperton, N., Cochran, J. R., Barron, A. E., Connolly, M. D., Blish, C. A., Lewis, D. B., Stanley, S. A., La Russa, M. F., Qi, L. S.
Nat. Commun., 2022
Multi-color super-resolution imaging to study human coronavirus RNA during cellular infection
Wang, J.#, Han, M.#, Roy, A. R., Wang, H., Möckl L., Zeng, L., Moerner, W. E., Qi, L. S. (#co-first author)
Cell Rep. Methods, 2022
Interrogation of the dynamic properties of higher-order heterochromatin using CRISPR-dCas9
Gao, Y., Han, M., Shang, S., Wang, H., Qi, L. S.
Mol. Cell, 2021
Engineering 3D genome organization
Wang, H.#, Han, M.#, Qi, L. S. (#co-first author)
Nat. Rev. Genet., 2021
Capture and identification of RNA-binding proteins by using click chemistry-assisted RNA-interactome capture (CARIC) strategy
Huang, R.#, Han, M.#, Meng, L., Chen, X. (#co-first author)
J. Vis. Exp., 2018
Transcriptome-wide discovery of coding and noncoding RNA-binding proteins
Huang, R.#, Han, M.#, Meng, L., Chen, X. (#co-first author)
Proc. Natl. Acad. Sci. USA, 2018
Artificial cysteine S-glycosylation induced by per-O-acetylated unnatural monosaccharides during metabolic glycan labeling
Qin, W., Qin, K., Fan, X., Peng, L., Hong, W., Zhu Y., Lv, P., Du, Y., Huang, R., Han, M., Chen, B., Liu, Y., Zhou, W., Wang, C., Chen, X.
Angew. Chem. Int. Ed., 2017